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Novels
- Afterage (1993)
-
Species (1995)
also appeared as:
- Translation: La mutante [French] (1995)
- Deadrush (1995)
- Music of the Spears (1996)
-
Final Impact (1997)
also appeared as:
- Variant: Millenium's Dark Embrace (unpublished)
-
Species II (1998)
also appeared as:
- Translation: Species II [Dutch] (1998)
- Red Shadows (1998)
- DeadTimes (2000)
-
Paleo (2000)
also appeared as:
- Translation: Sunnydale Park [French] (2002)
- Tempted Champions (2002)
-
Hellboy (2004)
also appeared as:
- Translation: Hellboy [Portuguese] (2004)
- Mirror Me (2004)
- The Darkening (2004)
- Shattered Twilight (2004)
- Broken Sunrise (2004)
- Elektra (2005)
- Ultraviolet (2006)
- Highborn (2010)
- Concrete Savior (2011)
- Ghost Heart (2014) with Weston Ochse
- The Usual Sacrifices (2017)
- Rift War (2022) with Weston Ochse
- The River of Souls (unpublished)
- The Willow Files, Vol. 1 (1999)
- The Willow Files, Vol. 2 (2001)
- Wicked Willow Omnibus (2004) [O]
- The Complete Aliens Omnibus: Volume Four (2017) [O/8,9] with S. D. Perry
- Surprise Fall (1984)
- The Melon-Colored Suit (1989)
- Victory's Ode (1989)
- The Peeping Tom (1989)
- Zachary's Glass Shoppe (1989)
- Memories (1990)
- Screamland (1990)
- The Cutting Room (1990)
- Pumpkin Dreams (1990)
- I Know What to Do (1990)
- I Smile for You, My Love (1991)
- Payback (1992)
- Feeding the Masses (1992)
- Pseudofiction (1992) with Brian A. Hodge and Jeff Johnston and Andrew Lynch and Elizabeth Massie and Jeff Oster and Stephen Mark Rainey and David Niall Wilson and Amy Wimberger [only as by Brian A. Hodge and Jeff Johnston and Andrew Lynch and Elizabeth Massie and Yvonne Navarro and Jeff Oster and Mark Rainey and David Niall Wilson and Amy Wimberger]
-
Chicago, IL (1992)
also appeared as:
- Variant: Do You Dream? (2002)
- For Love of Mother (1993)
- AfterAge (excerpt) (1993)
- Abraham (1993)
- Mama, I Need You (1993)
- The Enlightened (1994)
- Seastruck (1994)
- Dead Times (excerpt) (1995)
- Folds of the Faithful (1995)
- The Best Years of My Life (1995)
- The Nature of Death (1995)
- Touch Me (1995)
- Recall (1995)
- This House (1995)
-
Impulse (1995)
also appeared as:
- Translation: Aus dem Bauch heraus [German] (2008)
- Pictures Within (1996)
- Remembering What He Was (1996)
- The Stranger Who Sits Beside Me (1996)
-
One Among Millions (1996)
also appeared as:
- Translation: Uma entre milhões [Portuguese] (2021)
- Each Day is a Century (1997)
- Lifeline (1997)
- Motherdead (1997)
- 1961 (excerpt from DeadTimes) (1997)
- Four Famines Ago (1997)
- Cold Beneath the Vinegar Tree (1998)
- Notes from Emily, with Love (1998)
- Dad Brings a Deader Home (1998)
- Finding Destiny (1998)
- Rosner's Hat (1998)
- Sherri Goes to the Office (1998)
- Trigger Moment (1998)
- Intimate Insights (1999)
- File: Dead Man's Party (1999)
- File: I Robot, You Jane (1999)
- File: Phases (1999)
- Divine Justice (2000)
- Santa Alma (2000)
-
Medusa's Revenge (2000)
also appeared as:
- Translation: Medusas Rache [German] (2012)
- DeadTimes (excerpt) (2000)
- A Change of Yesterday (2000)
- Uncle Dead and the Fourth of July (2000)
- Ascension (2000)
- And White Splits the Night (2001)
- Die Blutgrafin (2001)
- File: Choices (2001)
- File: Doppelgängland (2001)
- File: Gingerbread (2001)
- Meet Me on the Other Side (2002)
- Dead Cat Does Chicago (2002)
- A Beacon Shall I Shine (2002)
- Mother, Personified (2002)
- 12 A.M.: Generous Presence (2002)
- 3 A.M.: Icicle Memories (2002)
- Dark of the Moon (2003)
- Share My Strength (2003)
- Craving (2005)
- Times of Atonement (2005)
- Changing the Color of Darkness (2005)
- Feeding the Dead Inside (2006)
- Only the Blind Survive (2009)
- For the Good of All (2009)
- Plague Angel (2010)
- Return (2012)
-
Epiphany, Part 1 (2012)
also appeared as:
- Translation: Heimkehr, Teil 1 [German] (2019)
-
Epiphany, Part 2 (2012)
also appeared as:
- Translation: Heimkehr, Teil 2 [German] (2019)
- Advanced Directive (2012)
- Holodomor Girl (2013)
- The Weight of a Dead Man (2013) with Weston Ochse
- Faceless (2013)
- Dead Little Pieces (2013)
- The Enemy Within, Part 1 (2014)
- The Enemy Within, Part 2 (2014)
- The Enemy Within, Part 3 (Concluded) (2014)
- Drive-In Destiny (2014)
- Those Who Shall Never Be Named (2015)
- Love Lost (2016)
- Superheated (2016)
- Reclamation (2017)
- WWRD (2018)
- The Prom Tree (2019)
- Abuse, Interrupted (2022)
- Apocalypse Lights (2022)
- Sly Dark in the Daylight (2022)
- Letter (2 AM, Fall 1989) (1989)
- Artist Profile (1991)
- Introduction (Southern Discomfort: The Selected Works of Elizabeth Massie) (1993)
- Necon X: a fond memory from the other side of sanity (1995)
- DeadTimes: Trading Death for Life (1995)
- Letter (Deathrealm, Spring 1996): Make Up Your Own Mind... (1996)
- The House on Chadwell Drive (1997)
- My Favorite Halloween Memory: Halloween Dreams (2000)
- Introduction (These I Know by Heart) (2001)
- Afterword (Afterage) (2002)
- Surprise Fall: Revisted (2003)
- "Why I Hate Women in Horror" (2013)
- Life by a Thousand Annoyances (2013)
- Babes Doing It Better ... or Just as Brutally: Well, Crap! (2013)
- I Hear Voices In My Head (2014)
- Taxes Noir (2014)
- Lions and Tigers and Monsters, Oh My! (2014)
- Not-So-Secret Societies (2014)
- Perfection (2015)
- Inside back cover (Deathrealm, Fall/Winter 1990) (1990)
- Payback (1992)
- A Woman Absent (1995)
- (interior artwork) (2021)
- They Thirst (2005) by Robert R. McCammon
- Yvonne Navarro Interview (1998) by Scott Ruddick
- An Interview with Yvonne Navarro (1999) by uncredited
- Interview: Yvonne Navarro (1999) by uncredited
- Yvonne Navarro: May 10, 1997 (2001) by Beth Gwinn and Stanley Wiater
- Interview: Yvonne Navarro (2014) by Jeff Heimbuch